Welcome to the SUDAZFLNC database, a database of Zebrafish RNAs. The database includes sequences of 28,925 lncRNAs, 25,432 mRNAs, and 368 miRNAs as well as time-course expression profiles of 3,288 lncRNAs, 25,432 mRNAs, and 342 miRNAs generated from RNA-seq experiments. SUDAZFLNC contains several annotation features of the RNAs including sequence length, hexamer score, GO and KEGG annotations, coding probabilities, and micropeptides. The database supports several bioinformatics features such as BLAST, search of sequence and data, and RNA-RNA interaction prediction.
This is an interface page. Navigate through the links to perform different database operations.
Click here to search KEGG annotations of zebrafish lncRNAs.
Click here to search GO annotations of zebrafish lncRNAs.
Click here to search coding probabilities of 25,411 lncRNAs.
Click here to perform BLAST of novel sequences to 28,925 lncRNAs.
Click here to search fasta format 276,035 micropeptides sequences encoded by 25,411 lncRNAs.
Click here to search time-course RNA-seq expression profiles of 3,288 lncRNAs.
Click here to search fasta format sequences of 368 miRNAs.
Click here to search time-course RNA-seq expression profiles of 342 miRNAs.
Click here to search fasta format sequences of 25,432 mRNAs.
Click here to search time-course RNA-seq expression profiles of 25,432 mRNAs.
Click here for RNA-RNA target prediction.
Click here to convert Ensembl, NCBI, NONCODE, and ZFLNCG zebrafish lncRNA IDs to SUDAZFLNC lncRNA IDs.